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| Friday, July 11, 2003 |
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| 9:00-9:05 |
Welcome and opening of the workshop |
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| 9:05-9:30 |
Gene Name Extraction Using FlyBase Resources |
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Alex Morgan, Lynette Hirschman, Alexander Yeh and Marc Colosimo |
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| 9:30-9:55 |
Unsupervised Monolingual and Bilingual Word-Sense Disambiguation of Medical Documents using UMLS |
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Dominic Widdows, Stanley Peters, Scott Cederberg, Chiu-Ki Chan, Diana Steffen and Paul Buitelaar |
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| 9:55-10:20 |
Using Domain-Specific Verbs for Term Classification |
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Irena Spasic, Goran Nenadic and Sophia Ananiadou |
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| 10:20-10:50 |
Break |
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| 10:50-11:05 |
Enhancing Performance of Protein Name Recognizers Using Collocation |
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Wen-Juan Hou and Hsin-Hsi Chen |
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| 11:05-11:30 |
Two-Phase Biomedical NE Recognition based on SVMs |
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Ki-Joong Lee, Young-Sook Hwang and Hae-Chang Rim |
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| 11:30-11:55 |
Boosting Precision and Recall of Dictionary-Based Protein Name Recognition |
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Yoshimasa Tsuruoka and Jun'ichi Tsujii |
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| 11:55-12:10 |
Effective Adaptation of Hidden Markov Model-based Named Entity Recognizer for Biomedical Domain |
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Dan Shen, Jie Zhang, Guodong Zhou, Jian Su and Chew-Lim Tan |
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| 12:10-12:25 |
Bio-Medical Entity Extraction using Support Vector Machines |
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Koichi Takeuchi and Nigel Collier |
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| 12:25-12:40 |
Protein Name Tagging for Biomedical Annotation in Text |
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Kaoru Yamamoto, Taku Kudo, Akihiko Konagaya and Yuji Matsumoto |
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| 12:40-14:00 |
Lunch |
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| 14:00-14:50 |
Invited Speech: Opportunities and Challenges for NLP in Biomedicine
Carol Friedman |
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| 14:50-15:05 |
Answering Clinical Questions with Role Identification |
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Yun Niu, Graeme Hirst, Gregory McArthur and Patricia Rodriguez-Gianolli |
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| 15:05-15:30 |
Extracting Information on Pneumonia in Infants Using Natural Language Processing of Radiology Reports |
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Eneida A. Mendonca, Janet Haas, Lyudmila Shagina, Elaine Larson and Carol Friedman |
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| 15:30-15:45 |
Identification of Patients with Congestive Heart Failure using a Binary Classifier: A Case Study. |
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Serguei V. Pakhomov, James Buntrock and Christopher G. Chute |
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| 16:10-16:25 |
Encoding Biomedical Resources in TEI: The Case of the GENIA Corpus |
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Tomaz Erjavec, Jin-Dong Kim, Tomoko Ohta, Yuka Tateisi and Jun'ichi Tsujii |
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| 16:25-16:40 |
Exploring Adjectival Modification in Biomedical Discourse Across Two Genres |
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Olivier Bodenreider and Serguei V. Pakhomov |
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| 15:45-16:10 |
Break |
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| 16:40-16:55 |
An Investigation of Various Information Sources for Classifying Biological names |
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Manabu Torii, Sachin Kamboj and K. Vijay-Shanker |
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| 16:55-17:10 |
Selecting Text Features for Gene Name Classification: from Documents to Terms |
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Goran Nenadic, Simon Rice, Irena Spasic, Sophia Ananiadou and Benjamin Stapley |
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| 17:10-17:30 |
Closing of the Workshop |
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